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Not sure how the TileSize attribute got in your L2 file, but the flags line up easily:l2_flags:flag_meanings = "ATMFAIL LAND PRODWARN HIGLINT HILT HISATZEN COASTZ SPARE8 STRAYLIGHT CLDICE COCCOLITH TURBIDW HISOLZEN SPARE14 LOWLW CHLFAIL NAVWARN ABSAER SPARE19 MAXAERITER MODGLINT CHLWARN ATMWARN...

Yes, it looks like our L1 reader for MSI data is flagging any pixel with bad Lt as NAVFAIL.  The scene you sent has mostly bad Lt except in the lower corner, which caused problems for the code which sets the North, South, East, West metadata.  We have new software that can handle this situ...

Remember that most of the MODIS bands used to calculate the products are 1KM,  so you need to decide if 250m resolution is appropriate.  This it what I would change to get the highest possible resolution from MODIS.modis_L1A.pygetanc.pymodis_GEO.pymodis_L1B.pyl2gen resolution=250 l2prod=ss...

can you give me an L1 file where l2gen produces a coordinate box for the whole earth.  Remember, if the scene is near a pole this bounding box is correct.

don

This file works fine for me with l2gen version 9.5.0-V2019.3.  Looks like l2gen is only allocating 3 L1 buffers when it needs 5.  Can you give me the exact command line you are using to run l2gen.  A smaller filter kernel can cause this problem.

don

looks like your OCSSW is installed at "~/ocssw".  You need to do these steps to setup the environment variables for the processing programs to work properly.

export OCSSWROOT=~/ocssw
source $OCSSWROOT/OCSSW_bash.env

Then you can run the programs without specifying the whole path.

don

Did you rebuild the 3rd party libraries in $OCSSWROOT/opt/src first?

don

Open JDK has never worked for us with SeaDAS.  I would suggest installing Oracle Java 1.8.  SeaDAS does not work with versions higher than 8.  You can get it here:

https://www.oracle.com/technetwork/java/javase/downloads/jdk8-downloads-2133151.html

don

Correct.  The latest update fixes this issue.

don

Did you install the GOCI data files?
Does directory

/Applications/seadas-7.5.3/ocssw/share/goci

exist?

don