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You are using /usr/bin/git which is probably still Ubuntu's old version.   What is echo $PATH?   The directory where the new git resides should come before/usr/bin.   Another option is to uninstall the Ubuntu version using your package manager (if this fails because...

As mentioned on the page you reference, the OCSSW Processing System does not at present run on Windows.     You can run it in a linux virtual machine or install linux on the Windows system.  You can also do some processing on Windows (e.g., without installing the OCSSW Processing...

The US Government has turned off "public-facing" http servers, see Changes to data distribution from the OB.DAAC and the OceanColor Web and Earthdata Login for Data Access.  The old URL you mentioned should redirect to https://oceandata.sci.gsfc.nasa.gov/ocssw/ (it does for me using F...

The negative values you are seeing from ncdump occur because the "unsigned" attribute is not be respected.  The NetCDF header says short sst(lat, lon) ;    sst:long_name = "Sea Surface Temperature" ;    sst:units = "degree_C" ;    sst:...

Matlab's current NetCDF reader should use the scale parameters (and missing value codes) from NetCDF-CF files without the need to apply scaling after the data have been loaded in Matlab.  Older versions of Matlab did not handle some NetCDF-CF files ("unsupported data type") in whi...

You asked "Is seadas.home of seadas.config different from $SEADAS ?".   The answer is that they should generally be the same, e.g., SEADAS and seadas.home are both set to <SeaDAS_Install_Dir>.  The GUI gets the value for seadas.home from <SeaDAS_Install_Dir>/.install4j/i4jpa...

Glad you got it working.  You should read Wget options for NASA https.

You should post you wget version and platform.  The https configuration used by NASA is not supported by older software, so you need a relatively recent version of wget and supporting libraries such as gnutls or openssl.   Hopefully someone else is using the same platform and can tell...

The fact that the processors are no longer grayed out indicates that the GUI is able to find them.  By default, the GUI puts OCSSWROOT in the top-level SeaDAS folder, while the manual installer puts it in your "home" directory.  Yours seems to have ended up in the top-level SeaDA...

The "gnutls_handshake() failed: Handshake failed" looks like the old version of git is being used.   You may need adjust the PATH variable to ensure that the new version is used, and you may want to uninstall the old git version.Your $OCSSWROOT/run/data/common/.git/config seems t...