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This appears to be a problem with the images in the L3 browser. The VIIRS L3 production is up to date. 
I'll notify the web admins of the problem. Try your query again tomorrow.
Tommy

I don't expect data from the calibration/commissioning phase to be made public.
The official public release date is 20-Oct-2016.

Tommy

I can answer some of  your questions.
The naming convention is:
A=Mission MODIS on Aqua
2016=starting year
336 = Starting day of year
2016 = ending year
366 = ending day of year

ZLEE is given in meters. angstrom is a unit-less product in the input Level-2 file, not the units of the output product.

Tommy

Our source for .25 degree OISST data is undergoing a server change that has delayed delivery of refined products.(see notice below)The latest data available to us is for 2017-03-15. Once the refined OISST products become available, our production of refined Ocean Color products will resume.=========...

I am seeing the L1 files now. 
Try refreshing your browser.

Tommy

We lost a back-end file storage device on Friday evening.  Try your file request on Monday after 10am EDT.  The host should be back online by then.

Tommy

I have checked two of the files referenced in your post and neither one appears on our archive.

MER_FRS_1PNUPA20040213_151354_000002732024_00154_10228_8087.N1.bz2
M20040441513.L1B_FRS.bz2

Are you working with an outdated list of files?

Tommy

There was a interruption of the sea ice processing at NSIDC.
They staged the source files for days 82-85 this morning.
You should see the ancillary data on our archive shortly.

Tommy

Have you digitally 'signed' the MERIS data access agreement on the URS authentication site?It looks like the URS site is prompting you to answer the questions required for MERIS access. Try pasting one of the wget URLs into web browser and complete the access form.When that step has been don...

The OMI instrument on Aura went into survival mode at 18:19:46Z on Sunday Mar 12th.
The instrument operations team is working on the problem.
The last time this happened, the instrument was offline for two weeks.

The alternative O3 data source is TOAST.

Tommy