Forum

I overlooked the first error:./BuildIt: 35: [: linux_64: unexpected operatorThe hdf5 BuildIt script hasn't changed for some time.  Please see if you can duplicate:ls -l $LIB3_DIR/src/hdf5/BuildIt; wc $LIB3_DIR/src/hdf5/BuildIt-rwxrwxr-x 1 gfireman gfireman 1899 2017-07-18 17:43 /accounts/gf...

A clue from your error log:
/seadas/lcl/ocssw/opt/src/hdf5/hdf5-1.8.18/build/bin/H5test_FortranHavekind: /seadas/lcl/ocssw/opt/lib/libgfortran.so.3: version `GFORTRAN_1.4' not found
Why is your compiler looking for gfortran in $LIB3_LIB?

Here's mine:gs616-shark$ uname -a; lsb_release -aLinux gs616-shark 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 x86_64 x86_64 GNU/LinuxNo LSB modules are available.Distributor ID:  UbuntuDescription:  Ubuntu 16.04.4 LTSRelease:  16.04Codename:  xenial...

We do not yet support building OCSSW on Ubuntu 18.04.  Please see this thread for more info:
https://oceancolor.gsfc.nasa.gov/forum/oceancolor/topic_show.pl?tid=8936

I'll keep working on it, but we do not have an estimate of how long it will take.

This suggests using the -no-pie compile option:https://stackoverflow.com/questions/50213089/linking-error-with-gcc-g-7-3-0-on-ubuntu-18-04You could edit $OCSSWROOT/CMakeLists.txt   # standard Linux bits...-  set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -std=c99 -D_XOPEN_SOURCE=600 -D_DEFA...

After making those changes, I'd start fresh: delete the existing build directory, then follow the build instructions in README.md, omitting the download steps.I'd also use just "make" instead of "make -j 20".   Leaving out the "-j" parameter will run o...

I believe the following will work.  It compiles, but I haven't tested it.1. In file $LIB3_DIR/src/BuildItremove from the subdirs list:  hdfeos hdfeos5 sdptk mapi sdst2. Delete from directory $OCSSWROOT/cmake/Modules FindHDFEOS.cmakeFindHDFEOS5.cmakeFindMapi.cmakeFindPGSTK.cmakeFindSDST...

I use bash too :)Your file is post-patch, which accounts for the different date and size.The ECS tools page lists a newer version of the SDPTK, but I don't know if it will work any better.  We are still running Ubuntu 16.04, so I don't have a way to test either installation.  (Don ...

The AA tool is a part of the Science Data Toolkit that we don't use, so that's not the problem.This is really bizarre.  Is /seadas/lcl on a remote disk, that maybe just glitched out for a second?Please try:ls -l $LIB3_DIR/src/sdptk/TOOLKIT/bin/INSTALL-ToolkitMine looks like:-rwxr-xr-x 1...

Bhavani -Do you have a network connection?Try this from the command line:curl https://oceandata.sci.gsfc.nasa.gov/Ancillary/?format=jsonYou should get:{"rows":[["Aquarius\/","-","-"],["Attitude-Ephemeris\/","-","-"],["LUTs\/&...