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That download link doesn't seem to be working.  Try the cached version at
https://webcache.googleusercontent.com/search?q=cache:6gSAMX11BakJ:https://landweb.modaps.eosdis.nasa.gov/QA_WWW/forPage/user_guide/MOD09_UserGuide_v1.4.pdf

The Ocean Color group does not distribute or use the MOD09 reflectance product, so we are unable to advise you.
You might want to download the user guide from https://modis.gsfc.nasa.gov/data/dataprod/mod09.php .

> The first issue is that getanc.py seems to be running more-or-less normally when it is called before l2gen, but when l2gen is called it uses climatology.Running "getanc.py -s 2019111193000" will create a file called "2019111193000.anc".The contents of this file must be passed t...

The l2bin process generates a binned observation statistics product, not an image.  The l2bin product needs to be interpreted by l3mapgen before it can be displayed in SeaDAS.

That line is indeed in error; we will fix it on our side.In the meantime, you could change the first period to a comma:  File "/home/itra/seadas-7.5.1/ocssw/scripts/modules/modis_utils.py", line 379from   print("ERROR: Could not find LUTs in".self.lutdir)to &#...

Yes, but not from us.  The Atmospheres products are described here:
https://modis-atmosphere.gsfc.nasa.gov/products/atm-profile
Please note that SeaDAS may not be able to open those products.

The new netcdf library (netcdflibversion=xx.xxx.xx.xx|hdf5libversion=1.8.18) writes strings with type CSET H5T_CSET_UTF8; the older version wrote them as CSET H5T_CSET_ASCII.IDL doesn't seem to handle this properly with the H5 interface.Here's an example of how to read variable attributes us...

Kim,Your first example references an old build, from April 2016:/data3/swdev/V2016.2/build/src/geogen_modis/GEO_location_main.c, main():MODIS_U_GEO_BEGIN:288778279Seed file: 6.2 Running MOD_PR03 MODIS Geolocation main() 6.2 compiled on Apr 26 2016 at 15:06:00 using makefile 1.1Your second example lo...

Maybe this thread will help?
https://oceancolor.gsfc.nasa.gov/forum/oceancolor/topic_show.pl?pid=38492

I overlooked the first error:./BuildIt: 35: [: linux_64: unexpected operatorThe hdf5 BuildIt script hasn't changed for some time.  Please see if you can duplicate:ls -l $LIB3_DIR/src/hdf5/BuildIt; wc $LIB3_DIR/src/hdf5/BuildIt-rwxrwxr-x 1 gfireman gfireman 1899 2017-07-18 17:43 /accounts/gf...