We are aware of and understand the problem (504 Gateway Time-out error) users are facing these days in downloading data. Our team is working on a solution, and hope to have a release out in the next week or so. In the meantime, if you get 504 error try again after a short pause or at a different time.
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The LP DAAC has forwarded your question to our Subject Matter Expert for assistance.
1. The recently downloaded MOD11C3 and MOD13C2 data does not contain SDS datasets(Index of /MOLT/MOD11C3.006 (usgs.gov))