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I understand that you are trying to do l2gen for sentinel 3 data. If you haven't read it, this page should be helpful to you: https://seadas.gsfc.nasa.gov/help-8.3.0/processors/ProcessL2gen.html
There is also a video with an example of using l2gen (https://www.youtube.com/watch?v=Mw3hg2w3xNg). There are more on SeaDAS website (https://seadas.gsfc.nasa.gov/).
If these do not help, please provide more information (e.g. your input file, error messages, etc.) so that our experts can provide more precise answer.