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Sorry for the hassles with the MYD11C1, the Climate Modeling Grids are a little different to work with then the tiled products. There is the Time of daytime (nighttime) observation SDS layer, but I am guessing it does not do you a lot of good if you do not have the coordinate that it goes with it. I have not used h5py myself yet, but I will run this by our developers to get their ideas. I am wondering if it would work with the HDFEOS4 format. In the meantime you may want to contact the folks at h5py and see if they have any suggestions.