OCSSW satellite validation matchup tools: val_extract failed

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arufasblanco
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Joined: Thu Nov 09, 2023 6:46 am America/New_York
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Re: OCSSW satellite validation matchup tools: val_extract failed

by arufasblanco » Wed Nov 22, 2023 7:19 am America/New_York

Hi!
Thanks for assisting with this. The change from the python script in /Users/Anna/SeaDAS/ocssw/ocssw_src/src/matchup_tools/mk_matchup.py to the executable in /Users/Anna/SeaDAS/ocssw/bin/make_matchup still prompts the same error. I'd like to share with you the under "$full_path_nc_file" (AQUA_MODIS.20110520T132501.L2.OC.nc) and the file under "$full_path_seabass_file" (matchup_entries.sb) so that you can replicate my error. Problem is that the "Attachments" only accept files with extensions gif, png, jpeg, jpg, tif, tiff, tga, pdf. How can I share with you files with .nc and .sb extensions?
Anna
Last edited by arufasblanco on Thu Nov 23, 2023 4:48 am America/New_York, edited 1 time in total.

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OB SeaDAS - xuanyang02
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Re: OCSSW satellite validation matchup tools: val_extract failed

by OB SeaDAS - xuanyang02 » Fri Nov 24, 2023 1:57 pm America/New_York

I can download AQUA_MODIS.20110520T132501.L2.OC.nc from our site. If your seabass file is downloadable, you can share the link so I can download the file. Otherwise, you can replace the filename matchup_entries.sb with matchup_entries.txt, and share the file here.

arufasblanco
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Re: OCSSW satellite validation matchup tools: val_extract failed

by arufasblanco » Sat Nov 25, 2023 6:13 am America/New_York

Since "txt" seems to be another invalid extension for attachment, I'm pasting below the content here of the "matchup_entries.sb" file.
Many thanks for your support,
Anna

%%%%%%%%%%%%%%%%%%%%%

/begin_header
/investigators=Anna_Rufas
/affiliations=University_of_Oxford
/contact=anna.rufasblanco@earth.ox.ac.uk
/experiment=a_cefas_experiment
/cruise=a_cefas_cruise
/station=NA
/data_file_name=matchup_entries.sb
/documents=unprovided_document
/data_type=pigment
/calibration_files=unprovided_calibration_file
/start_date=20100101
/end_date=20191101
/start_time=00:00:00[GMT]
/end_time=00:00:00[GMT]
/north_latitude=63.0[DEG]
/south_latitude=48.0[DEG]
/east_longitude=9.0[DEG]
/west_longitude=-11.0[DEG]
/measurement_depth=0
/water_depth=NA
/missing=-9999
/delimiter=comma
/fields=date,time,lat,lon,CHL
/units=yyyymmdd,hh:mm:ss,degrees,degrees,mg/m^3
/end_header
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20141007,04:12:00,50.17201667,-4.581566667,0.546067888
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OB SeaDAS - xuanyang02
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Re: OCSSW satellite validation matchup tools: val_extract failed

by OB SeaDAS - xuanyang02 » Tue Nov 28, 2023 10:54 am America/New_York

Thanks, Anna for sharing the content of matchup_entries.sb. I did replicate the error. It seems val_extract got called, but returned with error, and the error message was not helpful.

We are investigating the issue.

BTW, can you do seadas_info and share the result here?

Bing

arufasblanco
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Joined: Thu Nov 09, 2023 6:46 am America/New_York
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Re: OCSSW satellite validation matchup tools: val_extract failed

by arufasblanco » Tue Nov 28, 2023 11:33 am America/New_York

Hi Bing,

Sharing with you the result of seadas_info. Thanks for investigating this!

%%%%%%%%%%%%

Tue 28 Nov 2023 16:31:16 GMT
NASA Science Processing (OCSSW):
OCSSWROOT=/Users/Anna/SeaDAS/ocssw
OCDATAROOT=/Users/Anna/SeaDAS/ocssw/share
l2gen version: Reason: Incompatible library version: l2gen requires version 11.0.0 or later, but libX11.6.dylib provides version 10.0.0
l2bin version: Reason: image not found
l3bin version: Reason: image not found
l3mapgen version: Reason: image not found
Installed Missions: ['meris', 'aqua', 'olcis3a', 'olcis3b', 'viirsn', 'viirsj1', 'viirsj2', 'viirsdem']

General System and Software:
Operating system: MacOS 11.7.10
Java version: 21.0.1
Python3 version: 3.8.17
Python3 Path: /Users/Anna/.pyenv/versions/3.8.17/bin/python3
Env:
CC=gcc
CXX=g++
ELEMENTS=/Users/Anna/SeaDAS/ocssw/var/seawifs
EOS_LIB_PREFIX=macintel64
FC=gfortran
GCC_TUNE=
HDFEOS_LIB=/Users/Anna/SeaDAS/ocssw/opt/EOS/lib/macintel64
HRPT_STATION_IDENTIFICATION_FILE=/Users/Anna/SeaDAS/ocssw/share/seawifs/station/station_id.dat
L2GEN_ANC=/Users/Anna/SeaDAS/ocssw/var/anc
LIB3_BIN=/Users/Anna/SeaDAS/ocssw/opt/bin
LIB3_CHECK=0
LIB3_DIR=/Users/Anna/SeaDAS/ocssw/opt
LIB3_INC=/Users/Anna/SeaDAS/ocssw/opt/include
LIB3_LIB=/Users/Anna/SeaDAS/ocssw/opt/lib
NAVCTL=/Users/Anna/SeaDAS/ocssw/share/seawifs/nav
NAVQC=/Users/Anna/SeaDAS/ocssw/share/seawifs/nav
OCSSW_ARCH=macosx_intel
OCSSW_BIN=/Users/Anna/SeaDAS/ocssw/bin
OCSSW_DEBUG=0
OCSSW_MODIS=1
OCTS_REGISTRATION_TABLES=/Users/Anna/SeaDAS/ocssw/share/octs/nav
OCVARROOT=/Users/Anna/SeaDAS/ocssw/var
ORBCTL=/Users/Anna/SeaDAS/ocssw/share/seawifs/nav
PGSINC=/Users/Anna/SeaDAS/ocssw/opt/EOS/include
PGSLIB=/Users/Anna/SeaDAS/ocssw/opt/EOS/lib/macintel64
PROJ_DATA=/Users/Anna/SeaDAS/ocssw/opt/share/proj
PROJ_LIB=/Users/Anna/SeaDAS/ocssw/opt/share/proj
SWFTBL=/Users/Anna/SeaDAS/ocssw/share/seawifs/qc
SWTBL=/Users/Anna/SeaDAS/ocssw/share/seawifs
Tue 28 Nov 2023 16:31:22 GMT

arufasblanco
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Re: OCSSW satellite validation matchup tools: val_extract failed

by arufasblanco » Fri Dec 15, 2023 5:41 am America/New_York

Hi Bing,
Have you managed to make any progress on this investigation?
Many thanks,
Anna

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