Serveral failures like this

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OB.DAAC - SeanBailey
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Serveral failures like this

by OB.DAAC - SeanBailey » Sat Aug 24, 2019 3:22 pm America/New_York

Brock,
It should be fine to drop the missing libraries into the opt/lib directory....make sure that all the links are correct.
For example, that libhdf5_hl.so.10.3.0 is a link :libhdf5_hl.so.10.3.0 -> libhdf5_hl.so.1.8.19

Sean

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Serveral failures like this

by oo_processing » Sat Aug 24, 2019 11:26 pm America/New_York

Sean,
I think I got everything done correctly eg:
[optics0]$ ldd /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/bin/l2gen_new_753 | grep found
        liboc.so => not found                                                                                   
        libhdf5_hl.so.10.3.0 => not found                                                                       
        libhdf5.so.10.3.0 => not found                                                                          
        libboost_filesystem.so.1.69.0 => not found                                                              
        libboost_date_time.so.1.69.0 => not found                                                               
        libjansson.so.4 => not found
[optics0]$ ldd /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/bin/l2gen_new_753 | grep found
[optics0]$

However, I noticed that these two libboost_filesystem.so.1.69.0 and libboost_system.so.1.69.0

which have different links in the new version eg:
new
[optics0]$ ll /shares/cms_optics/apps/seadas-7.5.3/opt/lib/libboost_filesystem.so
lrwxrwxrwx 1 bmurch cms_optics 29 Aug 23 16:46 /shares/cms_optics/apps/seadas-7.5.3/opt/lib/libboost_filesystem.so -> libboost_filesystem.so.1.69.0
vs old
[optics0]$ ll /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/opt/lib/libboost_filesystem.so
lrwxrwxrwx 1 bmurch cms_optics 29 Jun  5  2018 /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/opt/lib/libboost_filesystem.so -> libboost_filesystem.so.1.60.0

Are not called directly by l2gen by their links (libboost_system.so && libboost_filesystem.so) so I don't know if it necessary (or dangerous) to unlink libboost_system.so && libboost_filesystem.so from the current 1.60.0 to create new links to the 1.69.0 versions?

Please let me know if there are different things linking to libboost_system.so && libboost_filesystem.so as I won't change the link in those cases. I'm pretty sure that others are linking to those, as they are not even in the old l2gen (but still in the opt/lib dir}
eg:
[optics0]$ ldd ./l2gen | grep libboost
[optics0]$

[bmurch@optics0 lib]$ ln -s libboost_filesystem.so.1.69.0 libboost_filesystem.so
[bmurch@optics0 lib]$ ln: creating symbolic link `libboost_filesystem.so': File exists
[bmurch@optics0 lib]$ ll libboost_system.so
lrwxrwxrwx 1 bmurch cms_optics 25 Jun  5  2018 libboost_system.so -> libboost_system.so.1.60.0
[bmurch@optics0 lib]$ ll libboost_system.so*
lrwxrwxrwx 1 bmurch cms_optics    25 Jun  5  2018 libboost_system.so -> libboost_system.so.1.60.0
-rwxrwxr-x 1 bmurch cms_optics 17040 Jun  5  2018 libboost_system.so.1.60.0
-rwxrwxr-x 1 bmurch cms_optics  8048 Aug 24 22:50 libboost_system.so.1.69.0
[bmurch@optics0 lib]$ ll libboost_filesystem.so*
lrwxrwxrwx 1 bmurch cms_optics     29 Jun  5  2018 libboost_filesystem.so -> libboost_filesystem.so.1.60.0
-rwxrwxr-x 1 bmurch cms_optics 224560 Jun  5  2018 libboost_filesystem.so.1.60.0
-rwxrwxr-x 1 bmurch cms_optics 250752 Aug 24 22:48 libboost_filesystem.so.1.69.0

Cheers
Brock

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Serveral failures like this

by oo_processing » Mon Aug 26, 2019 3:06 pm America/New_York

Sean,

I now seeing this error (-E- clo_getOptionString: option=water_spectra_file needs to be set), please advise:

[optics0]$ /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/bin/l2gen_new_9.5.0-C2019.3  par=A20192381530.1KM.NAAMES.L2_LAC_OC.par
Input file /work/b/bmurch/tmp/S4P_MODIS_H5_MODISA.NAAMES.2019.238_version_0.08_HwTi_97B_copy/MYD021KM.2019238.1530.NAAMES.hdf is MODIS Aqua Level-1B HDF-EOS product.
Loading default parameters from /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/share/common/msl12_defaults.par
Loading default parameters for MODISA from /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/share/modis/msl12_defaults.par
Loading default sub-sensor parameters for MODISA from /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/share/modis/aqua/msl12_defaults.par
Loading parameters for suite OC from /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/share/modis/msl12_defaults_OC.par
Loading command line parameters

Loading user parameters for MODISA

Loading characteristics for MODISA
Opening sensor information file /shares/cms_optics/apps/seadas/seadas-7.5/ocssw/share/modis/aqua/msl12_sensor_info.dat
  Bnd   Lam       Fo    Tau_r     k_oz    k_no2    t_co2   awhite       aw      bbw
    0  412.000  172.912 3.099e-01 1.987e-03 5.814e-19 1.000e+00 1.000e+00 2.030e-02 2.884e-03
    1  443.000  187.622 2.367e-01 3.189e-03 4.985e-19 1.000e+00 1.000e+00 1.110e-02 2.181e-03
    2  469.000  205.878 1.914e-01 8.745e-03 3.938e-19 1.000e+00 1.000e+00 1.034e-02 1.749e-03
    3  488.000  194.933 1.592e-01 2.032e-02 2.878e-19 1.000e+00 1.000e+00 1.676e-02 1.447e-03
    4  531.000  185.747 1.126e-01 6.838e-02 1.525e-19 1.000e+00 1.000e+00 4.494e-02 1.014e-03
    5  547.000  186.539 9.906e-02 8.622e-02 1.194e-19 1.000e+00 1.000e+00 5.491e-02 8.886e-04
    6  555.000  183.869 9.432e-02 9.553e-02 9.445e-20 1.000e+00 1.000e+00 5.839e-02 8.443e-04
    7  645.000  157.811 5.082e-02 7.382e-02 1.382e-20 1.000e+00 9.133e-01 3.458e-01 4.469e-04
    8  667.000  152.255 4.443e-02 4.890e-02 7.065e-21 1.000e+00 8.921e-01 4.923e-01 3.900e-04
    9  678.000  148.052 4.146e-02 3.787e-02 8.304e-21 1.000e+00 8.783e-01 5.116e-01 3.634e-04
   10  748.000  128.065 2.849e-02 1.235e-02 2.157e-21 1.000e+00 7.832e-01 2.800e+00 2.470e-04
   11  859.000   97.174 1.613e-02 2.347e-03 6.212e-23 1.000e+00 6.519e-01 4.396e+00 1.384e-04
   12  869.000   95.824 1.540e-02 1.936e-03 7.872e-23 1.000e+00 6.403e-01 4.727e+00 1.320e-04
   13 1240.000   45.467 3.617e-03 0.000e+00 0.000e+00 9.994e-01 0.000e+00 1.147e+02 3.021e-05
   14 1640.000   23.977 1.219e-03 0.000e+00 0.000e+00 9.890e-01 0.000e+00 6.689e+02 1.000e-05
   15 2130.000    9.885 4.286e-04 0.000e+00 0.000e+00 9.696e-01 0.000e+00 2.810e+03 3.465e-06

  Bnd   Lam
   16 3750.000
   17 3959.000
   18 4050.000
   19 6715.000
   20 7325.000
   21 8550.000
   22 11000.000
   23 12000.000

-E- clo_getOptionString: option=water_spectra_file needs to be set

OB.DAAC - SeanBailey
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Serveral failures like this

by OB.DAAC - SeanBailey » Mon Aug 26, 2019 8:43 pm America/New_York

Update the data files:

~/ocssw/share/common$ git diff ^HEAD~1 msl12_defaults.par                                     
diff --git a/msl12_defaults.par b/msl12_defaults.par                                                                   
index a019bf2..cbf0e4e 100644                                                                                          
--- a/msl12_defaults.par                                                                                               
+++ b/msl12_defaults.par                                                                                               
@@ -53,6 +53,9 @@  tauafile=$OCDATAROOT/common/taua865_climatology.hdf
# for brdf                                                                                                             
fqfile=$OCDATAROOT/common/morel_fq.nc                                                                                
+# for aw/bbw                                                                                                          
+water_spectra_file=$OCDATAROOT/common/water_spectra.dat                                                              
+                                                                                                                       
# lon/lat subsampling                                                                                                 
# -----------------------                                                                                              
ctl_pt_incr=1

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