L2gen failed with Segmentation fault
Posted: Tue Feb 28, 2023 3:02 pm America/New_York
Hi all,
I set up SeaDAS OCSSW but encountered some issues when running L2gen. Landsat 8 and MSI have the same problem which is:
execution exception: java.io.IOException: l2gen failed with exit code 139.
Check log for more details.
Loading default parameters from /Users/tonglin/SeaDAS/ocssw/share/common/msl12_defaults.par
Input file /Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_MTL.txt is a Landsat 8/9 OLI L1B GEOTIFF file.
Loading characteristics for OLIL8
Opening sensor information file /Users/tonglin/SeaDAS/ocssw/share/oli/msl12_sensor_info.dat
Bnd Lam Fo Tau_r k_oz k_no2 t_co2 awhite aw bbw
0 443.000 189.652 2.352e-01 2.929e-03 5.024e-19 1.000e+00 1.000e+00 7.170e-03 2.169e-03
1 482.000 200.396 1.685e-01 1.957e-02 3.213e-19 1.000e+00 1.000e+00 1.581e-02 1.529e-03
2 561.000 182.079 9.020e-02 1.038e-01 8.351e-20 1.000e+00 1.000e+00 6.998e-02 8.054e-04
3 655.000 155.038 4.793e-02 6.200e-02 1.177e-20 1.000e+00 1.000e+00 3.751e-01 4.215e-04
4 865.000 95.063 1.551e-02 2.223e-03 3.306e-23 1.000e+00 1.000e+00 4.630e+00 1.332e-04
5 1609.000 24.755 1.284e-03 0.000e+00 0.000e+00 1.000e+00 1.000e+00 7.607e+02 1.052e-05
6 2201.000 8.546 3.697e-04 0.000e+00 0.000e+00 1.000e+00 1.000e+00 2.250e+03 2.958e-06
Loading default parameters for OLIL8 from /Users/tonglin/SeaDAS/ocssw/share/oli/msl12_defaults.par
Loading default sub-sensor parameters for OLIL8 from /Users/tonglin/SeaDAS/ocssw/share/oli/l8/msl12_defaults.par
Loading parameters for suite OC from /Users/tonglin/SeaDAS/ocssw/share/oli/msl12_defaults_OC.par
Loading command line parameters
Loading user parameters for OLIL8
Internal data compression requested at compression level: 4
Reading Thuillier_F0.dat
OLI Level-1B /Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_MTL.txt
OLI Level-1B Collection 2
OLI Level-1B Band[0]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B1.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[1]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B2.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[2]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B3.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[3]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B4.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[4]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B5.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[5]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B6.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[6]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B7.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[7]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B8.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[8]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B9.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Angle File:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_ANG.txt
OLI Level-1B Band[0]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B1.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[1]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B2.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[2]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B3.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[3]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B4.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[4]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B5.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[5]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B6.TIF
OLI Level-1B Band[6]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B7.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[7]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B8.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[8]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B9.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Start Time: 2017-10-27 300 15:33:35.826468
OLI file has 7 bands, 7641 samples, 7771 lines
Allocated 7022107 bytes in L1 record.
Allocated 2659068 bytes in L2 record.
Opening: /Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/l2gen/LANDSAT8_OLI.20171027T153335.L2.OC.nc
/Users/tonglin/SeaDAS/ocssw/bin/ocssw_runner: line 23: 9497 Segmentation fault: 11 $*
I'm not sure what should I do. Can you help me with this problem?
Best,
Tong
I set up SeaDAS OCSSW but encountered some issues when running L2gen. Landsat 8 and MSI have the same problem which is:
execution exception: java.io.IOException: l2gen failed with exit code 139.
Check log for more details.
Loading default parameters from /Users/tonglin/SeaDAS/ocssw/share/common/msl12_defaults.par
Input file /Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_MTL.txt is a Landsat 8/9 OLI L1B GEOTIFF file.
Loading characteristics for OLIL8
Opening sensor information file /Users/tonglin/SeaDAS/ocssw/share/oli/msl12_sensor_info.dat
Bnd Lam Fo Tau_r k_oz k_no2 t_co2 awhite aw bbw
0 443.000 189.652 2.352e-01 2.929e-03 5.024e-19 1.000e+00 1.000e+00 7.170e-03 2.169e-03
1 482.000 200.396 1.685e-01 1.957e-02 3.213e-19 1.000e+00 1.000e+00 1.581e-02 1.529e-03
2 561.000 182.079 9.020e-02 1.038e-01 8.351e-20 1.000e+00 1.000e+00 6.998e-02 8.054e-04
3 655.000 155.038 4.793e-02 6.200e-02 1.177e-20 1.000e+00 1.000e+00 3.751e-01 4.215e-04
4 865.000 95.063 1.551e-02 2.223e-03 3.306e-23 1.000e+00 1.000e+00 4.630e+00 1.332e-04
5 1609.000 24.755 1.284e-03 0.000e+00 0.000e+00 1.000e+00 1.000e+00 7.607e+02 1.052e-05
6 2201.000 8.546 3.697e-04 0.000e+00 0.000e+00 1.000e+00 1.000e+00 2.250e+03 2.958e-06
Loading default parameters for OLIL8 from /Users/tonglin/SeaDAS/ocssw/share/oli/msl12_defaults.par
Loading default sub-sensor parameters for OLIL8 from /Users/tonglin/SeaDAS/ocssw/share/oli/l8/msl12_defaults.par
Loading parameters for suite OC from /Users/tonglin/SeaDAS/ocssw/share/oli/msl12_defaults_OC.par
Loading command line parameters
Loading user parameters for OLIL8
Internal data compression requested at compression level: 4
Reading Thuillier_F0.dat
OLI Level-1B /Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_MTL.txt
OLI Level-1B Collection 2
OLI Level-1B Band[0]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B1.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[1]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B2.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[2]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B3.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[3]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B4.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[4]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B5.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[5]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B6.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[6]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B7.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[7]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B8.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[8]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B9.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Angle File:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_ANG.txt
OLI Level-1B Band[0]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B1.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[1]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B2.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[2]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B3.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[3]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B4.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[4]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B5.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[5]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B6.TIF
OLI Level-1B Band[6]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B7.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[7]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B8.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Level-1B Band[8]:/Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/OLI_acolite_matchup_L1/LC08_L1TP_013031_20171027_20200902_02_T1/LC08_L1TP_013031_20171027_20200902_02_T1_B9.TIF
TIFFReadDirectory: Warning, Unknown field with tag 42113 (0xa481) encountered.
OLI Start Time: 2017-10-27 300 15:33:35.826468
OLI file has 7 bands, 7641 samples, 7771 lines
Allocated 7022107 bytes in L1 record.
Allocated 2659068 bytes in L2 record.
Opening: /Volumes/Tong_Lin/CUNY/Satellite_data/Landsat/LIS/Collection2/l2gen/LANDSAT8_OLI.20171027T153335.L2.OC.nc
/Users/tonglin/SeaDAS/ocssw/bin/ocssw_runner: line 23: 9497 Segmentation fault: 11 $*
I'm not sure what should I do. Can you help me with this problem?
Best,
Tong